internal rna seq database Search Results


arabidopsis rna-seq database  (SusTech GmbH)
90
SusTech GmbH arabidopsis rna-seq database
Detection of the CLE2 peptide from <t>Arabidopsis</t> xylem exudate. A, Arabidopsis xylem exudate was collected from cut surfaces of hypocotyls. B, Base peak chromatogram of purified Arabidopsis xylem exudate. C, The MS/MS spectrum of m/z 863.4 eluted at 9.0 min in (B) showed a fragmentation pattern identical to that of arabinosylated CLE2 peptides. B and C, One typical experiment of two replicates is shown. D, Relative mRNA level of the CLE2 gene. Plants grown on sucrose-free or 1% sucrose-containing media were treated with 50-µM DCMU or incubated in darkness for 24 h. The expression levels of each CLE2 gene in the treated samples were normalized to control roots. The dots represent individual measurements. Each result is the mean ± standard error of the mean ( sem ) of measurements obtained from three independent experiments.
Arabidopsis Rna Seq Database, supplied by SusTech GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/internal+rna+seq+database/pmc09342984-144-3-7?v=SusTech+GmbH
Average 90 stars, based on 1 article reviews
arabidopsis rna-seq database - by Bioz Stars, 2026-08
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mining of publicly available rna-seq databases  (Genomatix gmbh)
90
Genomatix gmbh mining of publicly available rna-seq databases
Detection of the CLE2 peptide from <t>Arabidopsis</t> xylem exudate. A, Arabidopsis xylem exudate was collected from cut surfaces of hypocotyls. B, Base peak chromatogram of purified Arabidopsis xylem exudate. C, The MS/MS spectrum of m/z 863.4 eluted at 9.0 min in (B) showed a fragmentation pattern identical to that of arabinosylated CLE2 peptides. B and C, One typical experiment of two replicates is shown. D, Relative mRNA level of the CLE2 gene. Plants grown on sucrose-free or 1% sucrose-containing media were treated with 50-µM DCMU or incubated in darkness for 24 h. The expression levels of each CLE2 gene in the treated samples were normalized to control roots. The dots represent individual measurements. Each result is the mean ± standard error of the mean ( sem ) of measurements obtained from three independent experiments.
Mining Of Publicly Available Rna Seq Databases, supplied by Genomatix gmbh, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/internal+rna+seq+database/pm35294884-331-5-7?v=Genomatix+gmbh
Average 90 stars, based on 1 article reviews
mining of publicly available rna-seq databases - by Bioz Stars, 2026-08
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plant public rna-seq database  (SusTech GmbH)
90
SusTech GmbH plant public rna-seq database
Detection of the CLE2 peptide from <t>Arabidopsis</t> xylem exudate. A, Arabidopsis xylem exudate was collected from cut surfaces of hypocotyls. B, Base peak chromatogram of purified Arabidopsis xylem exudate. C, The MS/MS spectrum of m/z 863.4 eluted at 9.0 min in (B) showed a fragmentation pattern identical to that of arabinosylated CLE2 peptides. B and C, One typical experiment of two replicates is shown. D, Relative mRNA level of the CLE2 gene. Plants grown on sucrose-free or 1% sucrose-containing media were treated with 50-µM DCMU or incubated in darkness for 24 h. The expression levels of each CLE2 gene in the treated samples were normalized to control roots. The dots represent individual measurements. Each result is the mean ± standard error of the mean ( sem ) of measurements obtained from three independent experiments.
Plant Public Rna Seq Database, supplied by SusTech GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/internal+rna+seq+database/pmc11707655-174-17-23?v=SusTech+GmbH
Average 90 stars, based on 1 article reviews
plant public rna-seq database - by Bioz Stars, 2026-08
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python-based suite to process raw rna-seq or exome-seq data for customized database construction  (SourceForge net)
90
SourceForge net python-based suite to process raw rna-seq or exome-seq data for customized database construction
Detection of the CLE2 peptide from <t>Arabidopsis</t> xylem exudate. A, Arabidopsis xylem exudate was collected from cut surfaces of hypocotyls. B, Base peak chromatogram of purified Arabidopsis xylem exudate. C, The MS/MS spectrum of m/z 863.4 eluted at 9.0 min in (B) showed a fragmentation pattern identical to that of arabinosylated CLE2 peptides. B and C, One typical experiment of two replicates is shown. D, Relative mRNA level of the CLE2 gene. Plants grown on sucrose-free or 1% sucrose-containing media were treated with 50-µM DCMU or incubated in darkness for 24 h. The expression levels of each CLE2 gene in the treated samples were normalized to control roots. The dots represent individual measurements. Each result is the mean ± standard error of the mean ( sem ) of measurements obtained from three independent experiments.
Python Based Suite To Process Raw Rna Seq Or Exome Seq Data For Customized Database Construction, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/internal+rna+seq+database/pmc05461547-9-19-2?v=SourceForge+net
Average 90 stars, based on 1 article reviews
python-based suite to process raw rna-seq or exome-seq data for customized database construction - by Bioz Stars, 2026-08
90/100 stars
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rna-seq analysis  (BioResource International Inc)
90
BioResource International Inc rna-seq analysis
Detection of the CLE2 peptide from <t>Arabidopsis</t> xylem exudate. A, Arabidopsis xylem exudate was collected from cut surfaces of hypocotyls. B, Base peak chromatogram of purified Arabidopsis xylem exudate. C, The MS/MS spectrum of m/z 863.4 eluted at 9.0 min in (B) showed a fragmentation pattern identical to that of arabinosylated CLE2 peptides. B and C, One typical experiment of two replicates is shown. D, Relative mRNA level of the CLE2 gene. Plants grown on sucrose-free or 1% sucrose-containing media were treated with 50-µM DCMU or incubated in darkness for 24 h. The expression levels of each CLE2 gene in the treated samples were normalized to control roots. The dots represent individual measurements. Each result is the mean ± standard error of the mean ( sem ) of measurements obtained from three independent experiments.
Rna Seq Analysis, supplied by BioResource International Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/internal+rna+seq+database/pmc07582866-275-0-17?v=BioResource+International+Inc
Average 90 stars, based on 1 article reviews
rna-seq analysis - by Bioz Stars, 2026-08
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maize rna-seq database  (SusTech GmbH)
90
SusTech GmbH maize rna-seq database
Detection of the CLE2 peptide from <t>Arabidopsis</t> xylem exudate. A, Arabidopsis xylem exudate was collected from cut surfaces of hypocotyls. B, Base peak chromatogram of purified Arabidopsis xylem exudate. C, The MS/MS spectrum of m/z 863.4 eluted at 9.0 min in (B) showed a fragmentation pattern identical to that of arabinosylated CLE2 peptides. B and C, One typical experiment of two replicates is shown. D, Relative mRNA level of the CLE2 gene. Plants grown on sucrose-free or 1% sucrose-containing media were treated with 50-µM DCMU or incubated in darkness for 24 h. The expression levels of each CLE2 gene in the treated samples were normalized to control roots. The dots represent individual measurements. Each result is the mean ± standard error of the mean ( sem ) of measurements obtained from three independent experiments.
Maize Rna Seq Database, supplied by SusTech GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/internal+rna+seq+database/pmc10814199-59-16-20?v=SusTech+GmbH
Average 90 stars, based on 1 article reviews
maize rna-seq database - by Bioz Stars, 2026-08
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gbm single cell rna-seq (scrna-seq) database  (Broad Institute Inc)
90
Broad Institute Inc gbm single cell rna-seq (scrna-seq) database
Detection of the CLE2 peptide from <t>Arabidopsis</t> xylem exudate. A, Arabidopsis xylem exudate was collected from cut surfaces of hypocotyls. B, Base peak chromatogram of purified Arabidopsis xylem exudate. C, The MS/MS spectrum of m/z 863.4 eluted at 9.0 min in (B) showed a fragmentation pattern identical to that of arabinosylated CLE2 peptides. B and C, One typical experiment of two replicates is shown. D, Relative mRNA level of the CLE2 gene. Plants grown on sucrose-free or 1% sucrose-containing media were treated with 50-µM DCMU or incubated in darkness for 24 h. The expression levels of each CLE2 gene in the treated samples were normalized to control roots. The dots represent individual measurements. Each result is the mean ± standard error of the mean ( sem ) of measurements obtained from three independent experiments.
Gbm Single Cell Rna Seq (Scrna Seq) Database, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/internal+rna+seq+database/pmc11209873__NIHMS2000496___supplement___1-79-14-26?v=Broad+Institute+Inc
Average 90 stars, based on 1 article reviews
gbm single cell rna-seq (scrna-seq) database - by Bioz Stars, 2026-08
90/100 stars
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rice rna-seq database  (SusTech GmbH)
90
SusTech GmbH rice rna-seq database
Detection of the CLE2 peptide from <t>Arabidopsis</t> xylem exudate. A, Arabidopsis xylem exudate was collected from cut surfaces of hypocotyls. B, Base peak chromatogram of purified Arabidopsis xylem exudate. C, The MS/MS spectrum of m/z 863.4 eluted at 9.0 min in (B) showed a fragmentation pattern identical to that of arabinosylated CLE2 peptides. B and C, One typical experiment of two replicates is shown. D, Relative mRNA level of the CLE2 gene. Plants grown on sucrose-free or 1% sucrose-containing media were treated with 50-µM DCMU or incubated in darkness for 24 h. The expression levels of each CLE2 gene in the treated samples were normalized to control roots. The dots represent individual measurements. Each result is the mean ± standard error of the mean ( sem ) of measurements obtained from three independent experiments.
Rice Rna Seq Database, supplied by SusTech GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/internal+rna+seq+database/pmc11022797-73-11-14?v=SusTech+GmbH
Average 90 stars, based on 1 article reviews
rice rna-seq database - by Bioz Stars, 2026-08
90/100 stars
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ubcs rna-seq dataset  (Huntsman International LLC)
90
Huntsman International LLC ubcs rna-seq dataset
A, consensus matrix at k = 4 for lncRNA expression across 63 <t>UBCS</t> samples. B, consensus matrix at k = 3 for lncRNA expression across 339 TCGA samples. C, contributing cancer types and mean consensus value of each UBCS cluster. D, contributing cancer types and mean consensus value of each TCGA cluster. “Representative” disease indicates the majority breast cancer subtype in the cluster, and numbers of models are given in brackets. Mean consensus value was computed from 200 runs of NMF.
Ubcs Rna Seq Dataset, supplied by Huntsman International LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/internal+rna+seq+database/pmc05042460-51-1-21?v=Huntsman+International+LLC
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ubcs rna-seq dataset - by Bioz Stars, 2026-08
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rna-seq methodologies  (Huntsman International LLC)
90
Huntsman International LLC rna-seq methodologies
A, consensus matrix at k = 4 for lncRNA expression across 63 <t>UBCS</t> samples. B, consensus matrix at k = 3 for lncRNA expression across 339 TCGA samples. C, contributing cancer types and mean consensus value of each UBCS cluster. D, contributing cancer types and mean consensus value of each TCGA cluster. “Representative” disease indicates the majority breast cancer subtype in the cluster, and numbers of models are given in brackets. Mean consensus value was computed from 200 runs of NMF.
Rna Seq Methodologies, supplied by Huntsman International LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/internal+rna+seq+database/pmc04369859-77-5-1?v=Huntsman+International+LLC
Average 90 stars, based on 1 article reviews
rna-seq methodologies - by Bioz Stars, 2026-08
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rna-seq  (DIMON International Inc)
90
DIMON International Inc rna-seq
A, consensus matrix at k = 4 for lncRNA expression across 63 <t>UBCS</t> samples. B, consensus matrix at k = 3 for lncRNA expression across 339 TCGA samples. C, contributing cancer types and mean consensus value of each UBCS cluster. D, contributing cancer types and mean consensus value of each TCGA cluster. “Representative” disease indicates the majority breast cancer subtype in the cluster, and numbers of models are given in brackets. Mean consensus value was computed from 200 runs of NMF.
Rna Seq, supplied by DIMON International Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/internal+rna+seq+database/pm21619637-426-14-8?v=DIMON+International+Inc
Average 90 stars, based on 1 article reviews
rna-seq - by Bioz Stars, 2026-08
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blood cell rna-seq data  (BioResource International Inc)
90
BioResource International Inc blood cell rna-seq data
A, consensus matrix at k = 4 for lncRNA expression across 63 <t>UBCS</t> samples. B, consensus matrix at k = 3 for lncRNA expression across 339 TCGA samples. C, contributing cancer types and mean consensus value of each UBCS cluster. D, contributing cancer types and mean consensus value of each TCGA cluster. “Representative” disease indicates the majority breast cancer subtype in the cluster, and numbers of models are given in brackets. Mean consensus value was computed from 200 runs of NMF.
Blood Cell Rna Seq Data, supplied by BioResource International Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/internal+rna+seq+database/pm40210679-167-2-10?v=BioResource+International+Inc
Average 90 stars, based on 1 article reviews
blood cell rna-seq data - by Bioz Stars, 2026-08
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Image Search Results


Detection of the CLE2 peptide from Arabidopsis xylem exudate. A, Arabidopsis xylem exudate was collected from cut surfaces of hypocotyls. B, Base peak chromatogram of purified Arabidopsis xylem exudate. C, The MS/MS spectrum of m/z 863.4 eluted at 9.0 min in (B) showed a fragmentation pattern identical to that of arabinosylated CLE2 peptides. B and C, One typical experiment of two replicates is shown. D, Relative mRNA level of the CLE2 gene. Plants grown on sucrose-free or 1% sucrose-containing media were treated with 50-µM DCMU or incubated in darkness for 24 h. The expression levels of each CLE2 gene in the treated samples were normalized to control roots. The dots represent individual measurements. Each result is the mean ± standard error of the mean ( sem ) of measurements obtained from three independent experiments.

Journal: Plant Physiology

Article Title: Long-distance translocation of CLAVATA3/ESR-related 2 peptide and its positive effect on roots sucrose status

doi: 10.1093/plphys/kiac227

Figure Lengend Snippet: Detection of the CLE2 peptide from Arabidopsis xylem exudate. A, Arabidopsis xylem exudate was collected from cut surfaces of hypocotyls. B, Base peak chromatogram of purified Arabidopsis xylem exudate. C, The MS/MS spectrum of m/z 863.4 eluted at 9.0 min in (B) showed a fragmentation pattern identical to that of arabinosylated CLE2 peptides. B and C, One typical experiment of two replicates is shown. D, Relative mRNA level of the CLE2 gene. Plants grown on sucrose-free or 1% sucrose-containing media were treated with 50-µM DCMU or incubated in darkness for 24 h. The expression levels of each CLE2 gene in the treated samples were normalized to control roots. The dots represent individual measurements. Each result is the mean ± standard error of the mean ( sem ) of measurements obtained from three independent experiments.

Article Snippet: Based on the Arabidopsis RNA-seq database ( http://ipf.sustech.edu.cn/pub/athrna/ ), the fragments per kilobase of transcript per million mapped reads values of the CLE1 and CLE4 – 7 genes appear to be comparable to those of the CLE2 and CLE3 genes .

Techniques: Purification, Tandem Mass Spectroscopy, Incubation, Expressing, Control

A, consensus matrix at k = 4 for lncRNA expression across 63 UBCS samples. B, consensus matrix at k = 3 for lncRNA expression across 339 TCGA samples. C, contributing cancer types and mean consensus value of each UBCS cluster. D, contributing cancer types and mean consensus value of each TCGA cluster. “Representative” disease indicates the majority breast cancer subtype in the cluster, and numbers of models are given in brackets. Mean consensus value was computed from 200 runs of NMF.

Journal: PLoS ONE

Article Title: Consensus Analysis of Whole Transcriptome Profiles from Two Breast Cancer Patient Cohorts Reveals Long Non-Coding RNAs Associated with Intrinsic Subtype and the Tumour Microenvironment

doi: 10.1371/journal.pone.0163238

Figure Lengend Snippet: A, consensus matrix at k = 4 for lncRNA expression across 63 UBCS samples. B, consensus matrix at k = 3 for lncRNA expression across 339 TCGA samples. C, contributing cancer types and mean consensus value of each UBCS cluster. D, contributing cancer types and mean consensus value of each TCGA cluster. “Representative” disease indicates the majority breast cancer subtype in the cluster, and numbers of models are given in brackets. Mean consensus value was computed from 200 runs of NMF.

Article Snippet: The UBCS RNA-Seq dataset was derived from fresh frozen breast tissue samples obtained from 88 women who had surgery at the Huntsman Cancer Hospital from 2009–2012.

Techniques: Expressing

Comparison between meta-genes driving clustering of UBSC and TCGA tumour samples.

Journal: PLoS ONE

Article Title: Consensus Analysis of Whole Transcriptome Profiles from Two Breast Cancer Patient Cohorts Reveals Long Non-Coding RNAs Associated with Intrinsic Subtype and the Tumour Microenvironment

doi: 10.1371/journal.pone.0163238

Figure Lengend Snippet: Comparison between meta-genes driving clustering of UBSC and TCGA tumour samples.

Article Snippet: The UBCS RNA-Seq dataset was derived from fresh frozen breast tissue samples obtained from 88 women who had surgery at the Huntsman Cancer Hospital from 2009–2012.

Techniques: Comparison

A consensus list of lncRNAs associated with the basal-like breast cancer intrinsic subtype.

Journal: PLoS ONE

Article Title: Consensus Analysis of Whole Transcriptome Profiles from Two Breast Cancer Patient Cohorts Reveals Long Non-Coding RNAs Associated with Intrinsic Subtype and the Tumour Microenvironment

doi: 10.1371/journal.pone.0163238

Figure Lengend Snippet: A consensus list of lncRNAs associated with the basal-like breast cancer intrinsic subtype.

Article Snippet: The UBCS RNA-Seq dataset was derived from fresh frozen breast tissue samples obtained from 88 women who had surgery at the Huntsman Cancer Hospital from 2009–2012.

Techniques:

A, CTD-2015G9 . 2 . B, CTD-2527I21 . 15 . C, LINC00393 . D, LINC01198 . E, RP11-10A14 . 5 . F, RP11-19E11 . 1 . Boxplots representing the basal-like subtype are highlighted in either red (UBCS) or blue (TCGA).

Journal: PLoS ONE

Article Title: Consensus Analysis of Whole Transcriptome Profiles from Two Breast Cancer Patient Cohorts Reveals Long Non-Coding RNAs Associated with Intrinsic Subtype and the Tumour Microenvironment

doi: 10.1371/journal.pone.0163238

Figure Lengend Snippet: A, CTD-2015G9 . 2 . B, CTD-2527I21 . 15 . C, LINC00393 . D, LINC01198 . E, RP11-10A14 . 5 . F, RP11-19E11 . 1 . Boxplots representing the basal-like subtype are highlighted in either red (UBCS) or blue (TCGA).

Article Snippet: The UBCS RNA-Seq dataset was derived from fresh frozen breast tissue samples obtained from 88 women who had surgery at the Huntsman Cancer Hospital from 2009–2012.

Techniques:

UBCS: A, stromal cell content. B, immune cell content. C, tumour purity. TCGA: D, stromal cell content. E, immune cell content. F, tumour purity.

Journal: PLoS ONE

Article Title: Consensus Analysis of Whole Transcriptome Profiles from Two Breast Cancer Patient Cohorts Reveals Long Non-Coding RNAs Associated with Intrinsic Subtype and the Tumour Microenvironment

doi: 10.1371/journal.pone.0163238

Figure Lengend Snippet: UBCS: A, stromal cell content. B, immune cell content. C, tumour purity. TCGA: D, stromal cell content. E, immune cell content. F, tumour purity.

Article Snippet: The UBCS RNA-Seq dataset was derived from fresh frozen breast tissue samples obtained from 88 women who had surgery at the Huntsman Cancer Hospital from 2009–2012.

Techniques: